Software

WARNING: These programs are free and are not guaranteed to work.

Please send ME an email if you use these programs so that I can Keep you informed about upgrades

fitDNM: Test of de novo enrichment that incorporates functional information

rvTDT: Population control weighted rare-variant Transmission Disequilibrium Test

coreTDT: Transmission Disequilibrium Test for compound heterozygous and recessive models

JAGUAR: Joint Analysis of Genotype and Group-specific Variability Using a Novel Score Test Approach to Map eQTL

CHASE: Case-control HAplotype Sharing analyses. Haplotype sharing analyses for genome-wide association studies.

BEAST: Backward Elimination Algorithm with Score-based Threshold. Robust regression for copy number detection

UNTYPED: Association testing for UNTYPED SNPs in case-control studies

PCPH: Projection Conditional on Parental Haplotypes. Robust haplotype/disease association analysis of case-parent data

GATOR: Genetic Association Tests based On Ranks. Robust association tests for quantitative phenotypes in family based studies.