.. BIOS-823-2018 documentation master file, created by
   sphinx-quickstart on Sat Oct  6 06:10:19 2018.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

BIOS823: Biomedical Big Data
=========================================

.. toctree::
   :maxdepth: 2
   :caption: Notebooks:

   S02_Relatinoal_Databases.ipynb
   S03_SQL.ipynb
   S04_NoSQL_MongoDB.ipynb
   S04_NoSQL_Redis.ipynb
   S05_NoSQL_Neo4j.ipynb
   S05_NoSQL_Setup.ipynb
   S06A_Scalars_Annotated.ipynb
   S06B_Vectors_Annotated.ipynb
   S06C_Matrices_Annotated.ipynb
   S06D_Sparse_Matrices_Annotated.ipynb
   S07A_Matrices_Linear_Combinations_Annotated.ipynb
   S07B_Sovling_Linear_Equations_Annotated.ipynb
   S07D_Least_Squares.ipynb
   S08_Solving_Linear_Systems_Examples.ipynb
   S09A_Dimension_Reduction_PCA.ipynb
   S09B_Dimension_Reduction_Nonlinear.ipynb
   S10_Anomaly_Detection.ipynb
   S11_Clustering.ipynb
   S12A_SVD.ipynb
   S12B_SVD_Applications.ipynb
   S13A_Root_Finding.ipynb
   S13B_Optimization.ipynb
   S13C_Optimization_Algorithms.ipynb
   S13D1_Optimization_Examples.ipynb
   S13D2_Optimization_Examples.ipynb
   S13E_Optimization_Line_Search.ipynb
   S13F_Least_Squares_Optimization.ipynb
   S13G_Gradient_Descent_Optimization.ipynb
   S13H_Constrained_Optimization.ipynb
   S14_Supervised_Learning.ipynb
   S15A_C.ipynb
   S15B_CPP.ipynb
   S15C_Native_Code_Compilation.ipynb
   S15D_Numba.ipynb
   S15E_Cython.ipynb
   S15F_PyBind11.ipynb
   S15G_Packaging.ipynb
   S16A_Parallel_Programming_Introduction.ipynb
   S16B_Multicore_Parallelism.ipynb
   S16C_Parallel_Programming_Extended_Example.ipynb
   S16D_IPyParallel.ipynb
   S16E_Scalable_Data_Analytics.ipynb
   S16F_Data_Sketches.ipynb
   S16_Performance_Summary.ipynb
   S17A_Text_Analysis_1.ipynb
   S17B_Text_Analysis_2.ipynb
   S18A_Time_Series_Manipulation_Smoothing.ipynb
   S18B_Time_Series_Modeling.ipynb

.. toctree::
   :maxdepth: 2
   :caption: Homework:

   Z00_Review.ipynb
   Z01_Varieties_of_Data.ipynb
   Z02_Relatinal_Databases_SQL.ipynb
   Z03_Linear_Algebra_Review.ipynb
   Z04_Unsupervised_Learning.ipynb
   Z05_SVD.ipynb
   Z06_Optimization.ipynb
   Z07_Supervised_Learning.ipynb
   Z08_Performance.ipynb
   Z09_Review.ipynb

Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`