| [Allen2007] | Allen, C.D., Okada, T., Tang, H.L., and Cyster, J.G. (2007). Imaging of germinal center selection events during affinity maturation. Science 315, 528-531. |
| [Meyer_Hermann2001] | Meyer-Hermann, M., Deutsch, A., and Or-Guil, M. (2001). Recycling probability and dynamical properties of germinal center reactions. Journal of theoretical biology 210, 265-285. |
| [Victora2010] | Victora, G.D., Schwickert, T.A., Fooksman, D.R., Kamphorst, A.O., Meyer-Hermann, M., Dustin, M.L., and Nussenzweig, M.C. (2010). Germinal center dynamics revealed by multiphoton microscopy with a photoactivatable fluorescent reporter. Cell 143, 592-605. |
| [Hucka2003] | Hucka, M., Finney, A., Sauro, H. M., Bolouri, H., Doyle, J. C., Kitano, H., SBML Forum. (2003). The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinformatics (Oxford, England), 19(4), 524–531. |
| [Development2013] | Development Process for SBML Level 3 - SBML.org. (n.d.). Retrieved October 22, 2013, from http://sbml.org/Documents/SBML_Development_Process_for_SBML_Level_3#The_Package_Working_Group_.28PWG.29 |
| [Bornstein2008] | Bornstein, B. J., Keating, S. M., Jouraku, A., & Hucka, M. (2008). LibSBML: an API Library for SBML. Bioinformatics, 24(6), 880–881. doi:10.1093/bioinformatics/btn051 |
| [Rodriguez2015] | Rodriguez N, Thomas A, Watanabe L, et al. JSBML 1.0: providing a smorgasbord of options to encode systems biology models. Bioinformatics 2015, 1-4, doi: 10.1093/bioinformatics/btv341. |
| [Fages2014] | Fages, F., Gay, S., & Soliman, S., 2014. Inferring reaction systems from ordinary differential equations. Theoretical Computer Science. http://doi.org/10.1016/j.tcs.2014.07.032 |
| [McGuire2015] | McGuire, P. (n.d.). pyparsing 2.0.0 : Python Package Index. Retrieved April 27, 2015, from https://pypi.python.org/pypi/pyparsing/2.0.0 |
| [Allen2007] | Allen et al. Imaging of Germinal Center Selection Event During Affinity Maturation. Science Vol 315, 528-531. 2007. |
| [Barroso2012] | Barroso R, Munoz LM, Barrondo S, et al., EBI2 regulates CXCL13-mediated responses by heterodimerization with CXCR5. The FASEB Journal Vol. 26, pp 4841-4854, December 2012. |
| [Dowling2014] | Dowling MR, Kan A, Heinzel S, Zhou JHS, Marchingo JM, Wellard CJ, et al., 2014. Stretched cell cycle model for proliferating lymphocytes. Proceedings of the National Academy of Sciences. 111 (17), 6377-6382. http://www.pnas.org/content/early/2014/04/11/1322420111.abstract |
| [Hesselgesser1998] | Hesselgesser et al., Identification and Characterization of the CXCR4 Chemokine Receptor in Human T Cell Lines, J Immunol 1998; 160:877-883. |
| [Schwanhausser2011] | Schwanhausser et al. Global quantification of mammalian gene expression control. Nature 2011 (473), 337-342. |
| [Vega2011] | Vega et al., Technical Advance: Surface plasmon resonance-based analysis of CXCL12 analysis of CXCL12 binding using immobilized lentiviral particles. Journal of Leukocyte Biology Vol 29, 1-10, 2011 |