In [1]:
head /data/hts2018_pilot/star_counts/*TOT*
head: /data/hts2018_pilot/star_counts/*TOT*: No such file or directory
In [2]:
egrep "CNAG_10500|CNAG_10501|CNAG_10502|CNAG_10503" /data/hts2018_pilot/star_counts/2_TOT_C_S17_L001_ReadsPerGene.out.tab
egrep: /data/hts2018_pilot/star_counts/2_TOT_C_S17_L001_ReadsPerGene.out.tab: No such file or directory
In [3]:
egrep "CNAG_10500|CNAG_10501|CNAG_10502|CNAG_10503" /data/hts2018_pilot/star_counts/2_*_C_*_L001_ReadsPerGene.out.tab
egrep: /data/hts2018_pilot/star_counts/2_*_C_*_L001_ReadsPerGene.out.tab: No such file or directory
In [4]:
grep -v CNAG /data/hts2018_pilot/star_counts/2_TOT_C_S17_L001_ReadsPerGene.out.tab
grep: /data/hts2018_pilot/star_counts/2_TOT_C_S17_L001_ReadsPerGene.out.tab: No such file or directory
In [5]:
cat /home/jovyan/work/scratch/2018_full_pilot/star_out/10_MA_C_S3_L001_Log.final.out
cat: /home/jovyan/work/scratch/2018_full_pilot/star_out/10_MA_C_S3_L001_Log.final.out: No such file or directory
In [6]:
grep rRNA /home/jovyan/work/scratch/2018_full_pilot/genome/Cryptococcus_neoformans_var_grubii_h99.CNA3.39.gtf
grep: /home/jovyan/work/scratch/2018_full_pilot/genome/Cryptococcus_neoformans_var_grubii_h99.CNA3.39.gtf: No such file or directory
In [7]:
head /home/jovyan/work/scratch/2018_full_pilot/genome/Cryptococcus_neoformans_var_grubii_h99.CNA3.dna.toplevel.fa
head: /home/jovyan/work/scratch/2018_full_pilot/genome/Cryptococcus_neoformans_var_grubii_h99.CNA3.dna.toplevel.fa: No such file or directory